Imaging Software Installation

Analysis of Functional Neuroimages (AFNI)

Mac OSX

Linux, Ubuntu 18.04

Linux, Fedora and Red Hat

Windows 10

If you already have AFNI installed, you can update using the command:

@update.afni.binaries -d

AFNI may say the version it is trying to update is no longer supported and recommend that you update to the latest version

In that case, you can use the -package option to update to the version that AFNI recommends

@update.afni.binaries -package macos_10.12_local

FSL: FMRIB Software Library

Mac OSX

Linux

Windows

FreeSurfer Software Suite

Mac or Linux

MATLAB

Create a mathorks account at https://www.mathworks.com/ using your UCSD email address

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The UCSD license should be listed as 1144083

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Click on the “products” tab at the top of your account page

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Download the latest release after providing your OS info

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Unzip the downloaded file

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Open the disk image

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Run the installer

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Log in using your Mathworks account credentials

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Accept the license agreement

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Select the campus license

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Choose the install location (Applications or default is OK)

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Select the products to install

  • See the image for our recommendation
  • Installing ALL products will result in a VERY long installation process
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Install Matlab

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